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Table 1 Description of the four large linkage blocks (resulting from inversion polymorphisms) on chromosomes Tgu5, Tgu11, Tgu13, and TguZ and the two smaller and less certain ones on chromosomes Tgu26 and Tgu27 found in wild Australian zebra finches

From: Fitness consequences of polymorphic inversions in the zebra finch genome

Chromosome

Inversion type

SNP ID

Position (bp)

Maximal r2

n SNPs

Tgu5

Pericentric

WZF00178137

962,370

0.996

152

WZF00169812

16,503,169

0.184

Tgu11

Paracentric

WZF00035574

86,193

0.187

38

WZF00031807

12,290,125

0.985

Tgu13

Paracentric

WZF00041237

150,262

0.904

163

WZF00041448

16,906,706

0.130

TguZ

Pericentric

WZF00231767

5,913,912

0.285

383

WZF00239958

68,830,532

0.261

Tgu26

Unknown

WZF00114713

657,240

0.101

16

WZF00114507

2,710,851

0.244

Tgu27

Unknown

WZF00115125

358,632

0.133

23

WZF00114985

3,097,302

0.553

  1. Inversions on chromosomes Tgu5 and TguZ had been previously found cytogenetically [45, 48, 50]. Centromere positions were taken from Knief and Forstmeier [57] and Warren et al. [56]. For each chromosome, we list the first and the last SNP (SNP ID is our SNP name) that is in LD with the LD region (defined as composite LD r2 > 0.1) and we indicate each SNP’s maximal value. n SNPs is the number of SNPs genotyped and contributing to the LD region