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Table 1 Schizophrenia-associated differentially methylated positions

From: An integrated genetic-epigenetic analysis of schizophrenia: evidence for co-localization of genetic associations and differential DNA methylation

Probe ID DNA methylation difference (%) P value Chromosome Base position Gene annotation
cg10311104 0.80 9.75E−10 7 23053899 FAM126A TSS200
cg08752433 2.78 1.05E−09 12 111016566 PPTC7 Body
cg26314722 1.85 1.73E−09 1 234867300   
cg24054898 1.64 5.91E−09 3 148721868 GYG1 Body
cg23684410 2.40 6.13E−09 11 116897558 SIK3 Body
cg00945209 1.91 9.66E−09 17 76801579 USP36 Body
cg18518074 2.29 1.03E−08 11 64642316 EHD1 Body
cg09706133 1.23 1.31E−08 15 68659758 ITGA11 Body
cg21522988 2.06 1.80E−08 12 29376872 FAR2 5′UTR
cg02656560 1.69 3.14E−08 17 19967600   
cg11418177 2.03 3.50E−08 4 142636072 IL15 5′UTR
cg06736148 2.14 3.68E−08 15 52416833 GNB5 Body
cg08655071 1.74 4.74E−08 1 209928895 TRAF3IP3 TSS1500
cg00829438 −1.02 5.26E−08 9 136213035 MED22 Body
cg27541604 1.65 5.57E−08 1 159046451 AIM2 5′UTR;1stExon
cg03149593 −1.24 5.98E−08 3 136988095   
cg14178364 1.44 6.43E−08 9 37529128 FBXO10 Body
cg14038731 1.42 6.70E−08 6 110732536 DDO Body
cg20737259 −3.09 7.79E−08 4 95038723   
cg09470958 1.20 8.35E−08 6 31055471   
cg13803727 1.43 8.65E−08 9 89445247   
cg03402926 1.72 8.77E−08 11 27340767   
cg07326387 −2.10 9.16E−08 4 44543613   
cg00092992 1.80 9.69E−08 1 33596100   
cg03665078 1.58 9.98E−08 5 118689961 TNFAIP8 Body
  1. Listed are all differentially methylated positions (DMPs) associated with schizophrenia (P < 1 × 10−7) with the corresponding P values and regression coefficients from the phase 1 discovery cohort. All DMPs with P < 5 × 10−5 are listed in Additional file 2: Table S3 with the corresponding P values and regression coefficients for the two independent replication cohorts