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Table 1 Schizophrenia-associated differentially methylated positions

From: An integrated genetic-epigenetic analysis of schizophrenia: evidence for co-localization of genetic associations and differential DNA methylation

Probe ID

DNA methylation difference (%)

P value

Chromosome

Base position

Gene annotation

cg10311104

0.80

9.75E−10

7

23053899

FAM126A

TSS200

cg08752433

2.78

1.05E−09

12

111016566

PPTC7

Body

cg26314722

1.85

1.73E−09

1

234867300

  

cg24054898

1.64

5.91E−09

3

148721868

GYG1

Body

cg23684410

2.40

6.13E−09

11

116897558

SIK3

Body

cg00945209

1.91

9.66E−09

17

76801579

USP36

Body

cg18518074

2.29

1.03E−08

11

64642316

EHD1

Body

cg09706133

1.23

1.31E−08

15

68659758

ITGA11

Body

cg21522988

2.06

1.80E−08

12

29376872

FAR2

5′UTR

cg02656560

1.69

3.14E−08

17

19967600

  

cg11418177

2.03

3.50E−08

4

142636072

IL15

5′UTR

cg06736148

2.14

3.68E−08

15

52416833

GNB5

Body

cg08655071

1.74

4.74E−08

1

209928895

TRAF3IP3

TSS1500

cg00829438

−1.02

5.26E−08

9

136213035

MED22

Body

cg27541604

1.65

5.57E−08

1

159046451

AIM2

5′UTR;1stExon

cg03149593

−1.24

5.98E−08

3

136988095

  

cg14178364

1.44

6.43E−08

9

37529128

FBXO10

Body

cg14038731

1.42

6.70E−08

6

110732536

DDO

Body

cg20737259

−3.09

7.79E−08

4

95038723

  

cg09470958

1.20

8.35E−08

6

31055471

  

cg13803727

1.43

8.65E−08

9

89445247

  

cg03402926

1.72

8.77E−08

11

27340767

  

cg07326387

−2.10

9.16E−08

4

44543613

  

cg00092992

1.80

9.69E−08

1

33596100

  

cg03665078

1.58

9.98E−08

5

118689961

TNFAIP8

Body

  1. Listed are all differentially methylated positions (DMPs) associated with schizophrenia (P < 1 × 10−7) with the corresponding P values and regression coefficients from the phase 1 discovery cohort. All DMPs with P < 5 × 10−5 are listed in Additional file 2: Table S3 with the corresponding P values and regression coefficients for the two independent replication cohorts