Fig. 3
From: An expanded evaluation of protein function prediction methods shows an improvement in accuracy
CAFA1 versus CAFA2 (top methods). A comparison in F max between the top-five CAFA1 models against the top-five CAFA2 models. Colored boxes encode the results such that (1) the colors indicate margins of a CAFA2 method over a CAFA1 method in F max and (2) the numbers in the box indicate the percentage of wins. For both the Molecular Function Ontology (a) and Biological Process Ontology (b) results: A CAFA1 top-five models (rows, from top to bottom) against CAFA2 top-five models (columns, from left to right). B Comparison of Naïve baselines trained respectively on SwissProt2011 and SwissProt2014. C Comparison of BLAST baselines trained on SwissProt2011 and SwissProt2014