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Table 1 Sequencing, alignment and variant statistics

From: Deep genome sequencing and variation analysis of 13 inbred mouse strains defines candidate phenotypic alleles, private variation and homozygous truncating mutations

Strain Raw bases (Gb) Mapped coverage SNPs Private Indels Private SVs Private
BUB/BnJ 135.42 38.92 4,982,043 54,418 929,617 19,187 37,034 5375
C57BL/10J 108.43 29.85 349,702 2733 83,930 1893 12,939 9904
C57BR/cdJ 140.94 39.76 2,601,138 9683 485,803 6307 18,927 3462
C58/J 153.06 43.76 2,834,841 27,805 547,151 11,726 20,666 3777
DBA/1J 139.79 38.55 5,129,920 9001 955,621 9684 34,239 4480
I/LnJ 124.97 34.11 5,547,267 78,583 1,013,686 24,628 36,612 6342
KK/HiJ 151.60 44.42 5,893,784 94,110 1,078,555 31,084 36,588 3725
MOLF/EiJ 112.55 30.68 19,027,669 1,818,029 2,892,638 367,208 79,239 17,394
NZB/B1NJ 133.24 36.15 5,473,276 54,189 1,014,782 20,670 34,406 3164
NZW/LacJ 160.46 49.06 5,736,044 52,902 1,051,170 21,397 38,207 3308
RF/J 147.33 43.18 5,090,115 32,390 937,091 13,440 44,205 11,685
SEA/GnJ 134.23 38.67 4,603,720 30,263 857,599 12,729 33,033 3686
ST/Bj 223.17 63.74 5,107,777 70,064 978,238 24,325 37,350 4474
  1. Total sequencing in Gigabases (Gb), mapped coverage (based on 3Gb genome) and the total and private number of SNPs, indels and large deletions is shown