Deep genome sequencing and variation analysis of 13 inbred mouse strains defines candidate phenotypic alleles, private variation and homozygous truncating mutations

Table 1 Sequencing, alignment and variant statistics

Strain	Raw bases (Gb)	Mapped coverage	SNPs	Private	Indels	Private	SVs	Private
BUB/BnJ	135.42	38.92	4,982,043	54,418	929,617	19,187	37,034	5375
C57BL/10J	108.43	29.85	349,702	2733	83,930	1893	12,939	9904
C57BR/cdJ	140.94	39.76	2,601,138	9683	485,803	6307	18,927	3462
C58/J	153.06	43.76	2,834,841	27,805	547,151	11,726	20,666	3777
DBA/1J	139.79	38.55	5,129,920	9001	955,621	9684	34,239	4480
I/LnJ	124.97	34.11	5,547,267	78,583	1,013,686	24,628	36,612	6342
KK/HiJ	151.60	44.42	5,893,784	94,110	1,078,555	31,084	36,588	3725
MOLF/EiJ	112.55	30.68	19,027,669	1,818,029	2,892,638	367,208	79,239	17,394
NZB/B1NJ	133.24	36.15	5,473,276	54,189	1,014,782	20,670	34,406	3164
NZW/LacJ	160.46	49.06	5,736,044	52,902	1,051,170	21,397	38,207	3308
RF/J	147.33	43.18	5,090,115	32,390	937,091	13,440	44,205	11,685
SEA/GnJ	134.23	38.67	4,603,720	30,263	857,599	12,729	33,033	3686
ST/Bj	223.17	63.74	5,107,777	70,064	978,238	24,325	37,350	4474

Total sequencing in Gigabases (Gb), mapped coverage (based on 3Gb genome) and the total and private number of SNPs, indels and large deletions is shown

ISSN: 1474-760X