From: Mash: fast genome and metagenome distance estimation using MinHash
Organism | Tech | Type | NCBI accession | Size (Mbp) | Time (CPU s) | LCA | Best hit |
---|---|---|---|---|---|---|---|
E. coli K12 MG1655 | MiSeq | Assembly | (SPAdes) | 4.6 | 2.45 | Entero. | E. coli K12 MG1655 |
E. coli K12 MG1655 | PacBio | Assembly | GCA_000801205 | 4.6 | 2.66 | Entero. | E. coli K12 MG1655 |
E. coli DH1 | ABI 3730 | Reads | (Trace Archive) | 60 | 17.08 | Entero. | E. coli DH1 |
E. coli K12 MG1655 | 454 | Reads | SRR797242 | 233 | 57.12 | Entero. | E. coli K12 MG1655 |
E. coli K12 MG1655 | Ion PGM | Reads | SRR515925 | 407 | 72.01 | E. coli | E. coli K12 1655 |
E. coli K12 MG1655 | MiSeq | Reads | SRR1770413 | 387 | 72.01 | Entero. | E. coli KLY |
E. coli K12 MT203 | HiSeq | Reads | SRR490124 | 2155 | 369.86 | E. coli | E. coli GCF_000833635 |
E. coli K12 MG1655 | PacBio | Reads | SRR1284073 | 397 | 77.96 | E. coli | E. coli XH140A GCF_000226585 |
E. coli K12 MG1655 | MinION | 1D | ERR764952..55 | 248 | 55.52 | Entero. | E. coli O113 H21 |
E. coli K12 MG1655 | MinION | 2D | ERR764952..55 | 134 | 27.82 | E. coli | E. coli GCF_000953515 |
B. anthracis Ames | MinION | 1D + 2D | SRR2671867 | 210 | 44.66 | B. anthracis | B. anthracis str. Carbosap |
B. cereus ATCC 10987 | MinION | 1D + 2D | SRR2671868 | 266 | 76.85 | B. cereus ATCC 10987 | B. cereus ATCC 10987 |
Zaire ebolavirus | MinION | 1D + 2D | ERR1050070 | 8.7 | 2.06 | Zaire ebolavirus | Zaire ebolavirus Mayinga |