Table 2 Mash runtime and output size for all-pairs RefSeq computation using various sketch and k-mer sizes
From: Mash: fast genome and metagenome distance estimation using MinHash
k = 16 | k = 21 | |||||||
|---|---|---|---|---|---|---|---|---|
Sketch size | Sketch (CPU h) | Dist (CPU h) | Size (Mb) | gzip (Mb) | Sketch (CPU h) | Dist (CPU h) | Size (Mb) | gzip (Mb) |
500 | 26.4 | 8.4 | 120.1 | 89.7 | 31.3 | 9.0 | 229.8 | 201.8 |
1000 | 27.7 | 15.9 | 224.9 | 179.7 | 31.3 | 17.4 | 439.2 | 399.6 |
5000 | 26.4 | 74.5 | 1022.5 | 873.8 | 31.6 | 83.6 | 2034.5 | 1924.6 |
10,000 | 26.8 | 146.9 | 1961.8 | 1691.1 | 31.7 | 164.0 | 3913.0 | 3696.2 |