Table 1 The properties of CHiCAGO-detected interactions in human lymphoblastoid cell line GM12878 and mESCs
From: CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data
GM12878 | mESC | |
|---|---|---|
Number of captured baits | 22,076 | 22,459 |
Total number of unique captured read pairs | Rep 1: 46,542,745 | Rep 1: 59,963,697 |
Rep 2: 118,813,226 | Rep 2: 82,026,534 | |
Rep 3: 73,881,698 | ||
Number of significant interactions | 88,667 | 94,148 |
Mean number of significant interactions per bait | 4.02 | 4.19 |
Median distance of cis-chromosomal interactions | 173,365 bp | 138,077 bp |