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Fig. 6 | Genome Biology

Fig. 6

From: CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data

Fig. 6

Chromatin features of promoter-interacting fragments detected using CHiCAGO. Yellow bars indicate overlaps with cis-interacting fragments within 1 Mb of promoter baits; blue bars indicate expected overlap values based on 100 random subsets of HindIII fragments. These subsets were selected to have a similar distribution of distances from gene promoters as the interacting fragments. a GM12878 CHi-C data. Chromatin features are obtained from the ENCODE project [61]. b mESC CHi-C data. Chromatin features are obtained from the mouse ENCODE project [62]. These plots are generated automatically by the CHiCAGO pipeline. Error bars represent 95 % confidence intervals

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