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Table 2 Genes acquired via HGT in other cyst and root-knot nematodes also found in the genome of G. rostochiensis

From: The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence

Process Gene family Function Pfam domains Highest AI Reference G. rostochiensis genes
Cell wall degradation GH5_2 Cellulases Cellulose degradation PF00150
Cellulase (glycosyl hydrolase family 5)
198.94 [12] GROS_g01454
GROS_g04677
GROS_g05961
GROS_g05962
GROS_g07338
GROS_g07446
GROS_g07949
GROS_g10505
GROS_g11008
GROS_g11200
GROS_g11949
Expansin-like proteins Softening of non-covalent bonds PF03330
Rare lipoprotein A (RlpA)-like double-psi beta-barrel
29.93 [90] GROS_g03476
GROS_g09961
GROS_g10585
GROS_g11726
GROS_g11727
GROS_g12817
GROS_g12966
GH53 candidate Arabinogalactan endo-1,4-beta-galactosidase Pectinose/arabinogalactan degradation PF07745
Glycosyl hydrolase family 53
349.30 [91] GROS_g08150
PL3 Pecate lyase Pectin degradation PF03211
Pectate lyase
137.06 [92, 93] GROS_g04366
GROS_g05398
GROS_g07968
Plant defense manipulation GH18 chitinase Chitin degradation PF00704
Glycosyl hydrolase family 18
2.30 [94] GROS_g11136
Chorismate mutase Conversion of Chorismate into SA PF01817
Chorismate mutase type II
42.36 [95] GROS_g02441
GROS_g08190
Candidate Isochorismatase Conversion of Chorismate into SA PF00857
Isochorismatase family
66.08 [96] GROS_g01640
Detoxification Candidate Cyanate lyase   PF02560
Cyanate lyase C-terminal domain
11.51 [17, 24] GROS_g09531
Nutrient processing GH32 invertase Degradation of sucrose in glucose and fructose PF00251
Glycosyl hydrolases family 32 N-terminal domain
241.26 [22, 23] GROS_g05724
GROS_g06434
GROS_g08674
GROS_g09735
GROS_g09969
GROS_g10583
GROS_g11374
GROS_g11397
GROS_g11793
GROS_g13274
GROS_g14232
VB1 thiD Vitamin B1 biosynthesis PF08543
Phosphomethylpyrimidine kinase
154.50 [97] GROS_g07352
VB1 thiE Vitamin B1 biosynthesis PF02581
Thiamine monophosphate synthase/TENI
163.99 [97] GROS_g07353
VB1 thi4 Vitamin B1 biosynthesis PF01946
Thi4 family
108.07 [97] GROS_g10855
VB1 thiM Vitamin B1 salvage PF02110 46.05 [97] GROS_g07354
Hydroxyethylthiazole kinase family
VB1 tenA Vitamin B1 salvage PF03070 108.33 [97] GROS_g05327
TENA/THI-4/PQQC family GROS_g07355
VB5 panC Vitamin B5 biosynthesis PF02569 183.11 [97] GROS_g05752
Pantoate-beta-alanine ligase
VB6 aSNO Vitamin B6 biosynthesis PF01680 12.72 [98] GROS_g08956
SOR/SNZ family
Candidate PolS Polyglutamate synthase Not known PF09587 102.00 [99] GROS_g07961
Bacterial capsule synthesis protein PGA_cap
Candidate GSI Glutamine synthase Nitrogen assimilation PF00120 29.24 [100, 101] GROS_g02362
Glutamine synthetase, catalytic domain
Feeding site induction NodL - like Candidate acetyltransferase PF12464
Maltose acetyltransferase
13.12 [100, 102] GROS_g11033
PF00132
Bacterial transferase hexapeptide (six repeats)
Not known Candidate L-threonine aldolase ?? PF01212
Beta-eliminating lyase
164.69 [100] GROS_g10421
GROS_g10422
GROS_g10423
Candidate Phosphorybosyl transferase ?? PF00156
Phosphoribosyl transferase domain
198.13 [100, 101] GROS_g04632
GROS_g06735