Process | Gene family | Function | Pfam domains | Highest AI | Reference | G. rostochiensis genes |
---|---|---|---|---|---|---|
Cell wall degradation | GH5_2 Cellulases | Cellulose degradation | PF00150 Cellulase (glycosyl hydrolase family 5) | 198.94 | [12] | GROS_g01454 |
GROS_g04677 | ||||||
GROS_g05961 | ||||||
GROS_g05962 | ||||||
GROS_g07338 | ||||||
GROS_g07446 | ||||||
GROS_g07949 | ||||||
GROS_g10505 | ||||||
GROS_g11008 | ||||||
GROS_g11200 | ||||||
GROS_g11949 | ||||||
Expansin-like proteins | Softening of non-covalent bonds | PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel | 29.93 | [90] | GROS_g03476 | |
GROS_g09961 | ||||||
GROS_g10585 | ||||||
GROS_g11726 | ||||||
GROS_g11727 | ||||||
GROS_g12817 | ||||||
GROS_g12966 | ||||||
GH53 candidate Arabinogalactan endo-1,4-beta-galactosidase | Pectinose/arabinogalactan degradation | PF07745 Glycosyl hydrolase family 53 | 349.30 | [91] | GROS_g08150 | |
PL3 Pecate lyase | Pectin degradation | PF03211 Pectate lyase | 137.06 | GROS_g04366 | ||
GROS_g05398 | ||||||
GROS_g07968 | ||||||
Plant defense manipulation | GH18 chitinase | Chitin degradation | PF00704 Glycosyl hydrolase family 18 | 2.30 | [94] | GROS_g11136 |
Chorismate mutase | Conversion of Chorismate into SA | PF01817 Chorismate mutase type II | 42.36 | [95] | GROS_g02441 | |
GROS_g08190 | ||||||
Candidate Isochorismatase | Conversion of Chorismate into SA | PF00857 Isochorismatase family | 66.08 | [96] | GROS_g01640 | |
Detoxification | Candidate Cyanate lyase | PF02560 Cyanate lyase C-terminal domain | 11.51 | GROS_g09531 | ||
Nutrient processing | GH32 invertase | Degradation of sucrose in glucose and fructose | PF00251 Glycosyl hydrolases family 32 N-terminal domain | 241.26 | GROS_g05724 | |
GROS_g06434 | ||||||
GROS_g08674 | ||||||
GROS_g09735 | ||||||
GROS_g09969 | ||||||
GROS_g10583 | ||||||
GROS_g11374 | ||||||
GROS_g11397 | ||||||
GROS_g11793 | ||||||
GROS_g13274 | ||||||
GROS_g14232 | ||||||
VB1 thiD | Vitamin B1 biosynthesis | PF08543 Phosphomethylpyrimidine kinase | 154.50 | [97] | GROS_g07352 | |
VB1 thiE | Vitamin B1 biosynthesis | PF02581 Thiamine monophosphate synthase/TENI | 163.99 | [97] | GROS_g07353 | |
VB1 thi4 | Vitamin B1 biosynthesis | PF01946 Thi4 family | 108.07 | [97] | GROS_g10855 | |
VB1 thiM | Vitamin B1 salvage | PF02110 | 46.05 | [97] | GROS_g07354 | |
Hydroxyethylthiazole kinase family | ||||||
VB1 tenA | Vitamin B1 salvage | PF03070 | 108.33 | [97] | GROS_g05327 | |
TENA/THI-4/PQQC family | GROS_g07355 | |||||
VB5 panC | Vitamin B5 biosynthesis | PF02569 | 183.11 | [97] | GROS_g05752 | |
Pantoate-beta-alanine ligase | ||||||
VB6 aSNO | Vitamin B6 biosynthesis | PF01680 | 12.72 | [98] | GROS_g08956 | |
SOR/SNZ family | ||||||
Candidate PolS Polyglutamate synthase | Not known | PF09587 | 102.00 | [99] | GROS_g07961 | |
Bacterial capsule synthesis protein PGA_cap | ||||||
Candidate GSI Glutamine synthase | Nitrogen assimilation | PF00120 | 29.24 | GROS_g02362 | ||
Glutamine synthetase, catalytic domain | ||||||
Feeding site induction | NodL - like | Candidate acetyltransferase | PF12464 Maltose acetyltransferase | 13.12 | GROS_g11033 | |
PF00132 Bacterial transferase hexapeptide (six repeats) | ||||||
Not known | Candidate L-threonine aldolase | ?? | PF01212 Beta-eliminating lyase | 164.69 | [100] | GROS_g10421 |
GROS_g10422 | ||||||
GROS_g10423 | ||||||
Candidate Phosphorybosyl transferase | ?? | PF00156 Phosphoribosyl transferase domain | 198.13 | GROS_g04632 | ||
GROS_g06735 |