Table 1 Single-cell RNA-seq expression studies used for meta-analysis, sorted by GEO ID (GEO ID = Gene Expression Omnibus Identifier). Experiments were defined by unique GEO ID
From: Exploiting single-cell expression to characterize co-expression replicability
First author | Year | Journal | GEO ID | Samples | Cell types |
|---|---|---|---|---|---|
Deng | 2014 | Science | GSE45719 | 266 | 9 |
Streets | 2014 | PNAS | GSE47835 | 56 | 1 |
Treutlein | 2014 | Nature | GSE52583 | 184 | 6 |
Jaitin | 2014 | Science | GSE54006 | 12 | 1 |
Kim | 2015 | Cell Stem Cell | GSE55291 | 56 | 3 |
Biase | 2014 | Genome Research | GSE57249 | 40 | 1 |
Kowalczyk | 2015 | Genome Research | GSE59114 | 1933 | 12 |
Brunskill | 2014 | Development | GSE59127 | 86 | 1 |
Brunskill | 2014 | Development | GSE59129 | 49 | 1 |
Brunskill | 2014 | Development | GSE59130 | 57 | 1 |
Usoskin | 2015 | Nature Neuroscience | GSE59739 | 638 | 5 |
Sansom | 2014 | Genome Research | GSE60297 | 174 | 1 |
Zeisel | 2015 | Science | GSE60361 | 2975 | 7 |
Kumar | 2014 | Nature | GSE60749 | 415 | 4 |
Velten | 2015 | Molecular Systems Biology | GSE60768 | 100 | 3 |
Moignard | 2015 | Nature Biotechnology | GSE61470 | 15 | 1 |
Grun | 2015 | Nature | GSE62270 | 1154 | 12 |
Macosko | 2015 | Cell | GSE63472 | 8120 | 38 |
Li | 2015 | Cell Research | GSE63576 | 204 | 1 |
Lindeman | 2015 | Current Biology | GSE64960 | 67 | 1 |
Klein | 2015 | Cell | GSE65525 | 8649 | 6 |
Chen | 2015 | Developmental Cell | GSE66202 | 91 | 3 |
Du | 2015 | Thorax | GSE69761 | 148 | 1 |
Fuzik | 2015 | Nature Biotechnology | GSE70844 | 76 | 1 |
Shin | 2015 | Cell Stem Cell | GSE71485 | 167 | 2 |
Tasic | 2015 | Nature Neuroscience | GSE71585 | 1740 | 8 |
Burns | 2015 | Nature Communications | GSE71982 | 278 | 13 |
Gaublomme | 2015 | Cell | GSE74833 | 722 | 13 |
Kimmerling | 2015 | Nature Communications | GSE74923 | 178 | 2 |
Hanchate | 2015 | Science | GSE75413 | 84 | 4 |
Fan | 2016 | Nature Methods | GSE76005 | 65 | 1 |