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Fig. 2 | Genome Biology

Fig. 2

From: High-performance web services for querying gene and variant annotation

Fig. 2

The demo workflow for candidate gene prioritization using MyVariant.info and MyGene.info web services. We reimplemented five filtering steps in this workflow to prioritize candidate genes from a Miller syndrome study [17]. Selected R code is displayed for each filter step, using myvariant and mygene Bioconductor packages. The number of candidate genes left at each filtering step is displayed at the left side. The full code is available at https://github.com/sulab/myvariant.info/blob/master/docs/ipynb/myvariant_R_miller.ipynb, and also in Additional file 2: Supplementary Note 1

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