From: Pooling across cells to normalize single-cell RNA sequencing data with many zero counts
Method | Brain | Â | inDrop | ||||
---|---|---|---|---|---|---|---|
 | Total | Down | Up |  | Total | Down | Up |
DEseq | 5073 | 894 | 4179 | Â | 497 | 298 | 199 |
TMM | 4489 | 1051 | 3438 | Â | 462 | 239 | 223 |
Library size | 4258 | 1176 | 3082 | Â | 492 | 199 | 293 |
Deconvolution | 3632 | 1706 | 1926 | Â | 489 | 212 | 277 |
shared with DESeq | 2820 | 894 | 1926 | Â | 411 | 212 | 199 |
shared with TMM | 2977 | 1051 | 1926 | Â | 435 | 212 | 223 |
shared with library size | 3102 | 1176 | 1926 | Â | 475 | 198 | 277 |