From: Pooling across cells to normalize single-cell RNA sequencing data with many zero counts
Method | Brain | inDrop | |||||
---|---|---|---|---|---|---|---|
Total | Down | Up | Total | Down | Up | ||
DEseq | 5073 | 894 | 4179 | 497 | 298 | 199 | |
TMM | 4489 | 1051 | 3438 | 462 | 239 | 223 | |
Library size | 4258 | 1176 | 3082 | 492 | 199 | 293 | |
Deconvolution | 3632 | 1706 | 1926 | 489 | 212 | 277 | |
shared with DESeq | 2820 | 894 | 1926 | 411 | 212 | 199 | |
shared with TMM | 2977 | 1051 | 1926 | 435 | 212 | 223 | |
shared with library size | 3102 | 1176 | 1926 | 475 | 198 | 277 |