Method
|
SD low
|
SD medium
|
SD high
|
NE (Kâ=â1)
|
NN (Kâ=â1)
|
TxDiff low
|
TxDiff medium
|
TxDiff high
|
deFC low
|
deFC medium
|
deFC high
|
pAUC
|
---|
Cufflinks
|
0.73 (0.002)
|
0.54 (0.003)
|
0.26 (0.001)
|
0.090
|
0.657
|
0.34 (0.011)
|
0.08 (0.003)
|
0.05 (0.003)
|
0.53 (0.009)
|
0.95 (0.006)
|
0.98 (0.003)
|
0.61
|
eXpress
|
0.71 (0.003)
|
0.67 (0.004)
|
0.30 (0.001)
|
0.09
|
0.68
|
0.33 (0.009)
|
0.07 (0.003)
|
0.07 (0.003)
|
0.47 (0.011)
|
0.87 (0.015)
|
0.91 (0.012)
|
0.60
|
Flux Capacitor
|
1.03 (0.004)
|
1.23 (0.007)
|
0.40 (0.002)
|
0.15
|
0.63
|
0.46 (0.013)
|
0.15 (0.006)
|
0.07 (0.004)
|
0.39 (0.011)
|
0.82 (0.013)
|
0.97 (0.009)
|
0.52
|
Kallisto
|
0.72 (0.003)
|
0.55 (0.003)
|
0.27 (0.001)
|
0.10
|
0.63
|
0.37 (0.011)
|
0.08 (0.004)
|
0.05 (0.003)
|
0.56 (0.008)
|
0.95 (0.006)
|
0.98 (0.002)
|
0.58
|
RSEM
|
0.65 (0.002)
|
0.48 (0.003)
|
0.25 (0.001)
|
0.08
|
0.69
|
0.43 (0.011)
|
0.07 (0.004)
|
0.04 (0.003)
|
0.58 (0.008)
|
0.96 (0.006)
|
1.00 (0.003)
|
0.65
|
Sailfish
|
0.76 (0.003)
|
0.65 (0.004)
|
0.30 (0.001)
|
0.11
|
0.57
|
0.34 (0.009)
|
0.08 (0.004)
|
0.05 (0.003)
|
0.52 (0.011)
|
0.94 (0.011)
|
0.96 (0.006)
|
0.56
|
Salmon
|
0.64 (0.002)
|
0.52 (0.003)
|
0.26 (0.001)
|
0.09
|
0.67
|
0.35 (0.010)
|
0.08 (0.004)
|
0.05 (0.003)
|
0.54 (0.008)
|
0.95 (0.007)
|
1.00 (0.003)
|
0.61
|
- The last four columns are based on differential expression of transcripts. pAUC partial area under the receiver operating characteristic curve