Skip to main content

Table 5 Performance metrics under simulation scenario 3 (opposite effects)

From: An evaluation of methods correcting for cell-type heterogeneity in DNA methylation studies

Method Number of false positives Power KS GIF \(\hat {K}\)
Unadjusted 5 0.490 0.041 0.97
Ref-based 1 0.506 0.036 0.87
Ref-free 176 0.608 0.053 1.19 14
SVA 37 0.562 0.003 1.00 10
ISVA 49 0.558 0.006 1.01 14
EWASher 0 0.128 0.092 0.74
CellCDec 3 0.502 0.033 0.88
Deconf 2 0.522 0.035 0.89
RUV 23 0.532 0.012 1.00 37
  1. KS Kolmogorov–Smirnov statistic, GIF genomic inflation factor