From: An evaluation of methods correcting for cell-type heterogeneity in DNA methylation studies
Method | Number of false positives | Power | KS | GIF | \(\hat {K}\) |
---|---|---|---|---|---|
Unadjusted | 5 | 0.490 | 0.041 | 0.97 | – |
Ref-based | 1 | 0.506 | 0.036 | 0.87 | – |
Ref-free | 176 | 0.608 | 0.053 | 1.19 | 14 |
SVA | 37 | 0.562 | 0.003 | 1.00 | 10 |
ISVA | 49 | 0.558 | 0.006 | 1.01 | 14 |
EWASher | 0 | 0.128 | 0.092 | 0.74 | – |
CellCDec | 3 | 0.502 | 0.033 | 0.88 | – |
Deconf | 2 | 0.522 | 0.035 | 0.89 | – |
RUV | 23 | 0.532 | 0.012 | 1.00 | 37 |