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Table 8 Evaluation of the EAGER pipeline in comparison with already published data (ENA SAMEA2697125)

From: EAGER: efficient ancient genome reconstruction

 

EAGER

Published

Ti/Tv ratio

2.21

2.4

Ti/Tv dbSNP

2.1

2.13

Total variants predicted

4,098,642

4,340,699

Variants annotated in dbSNP

3,626,496

3,419,360

% dbSNP

88.48

78.77

  1. For whole human genomes, a good Ti/Tv ratio is typically considered to be around approximately 2.1 and a high percentage of >80 % of the total found variants in a sample is expected to be found in the dbSNP database (see last row)
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Genome Biology

ISSN: 1474-760X

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