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Table 8 Evaluation of the EAGER pipeline in comparison with already published data (ENA SAMEA2697125)

From: EAGER: efficient ancient genome reconstruction

  EAGER Published
Ti/Tv ratio 2.21 2.4
Ti/Tv dbSNP 2.1 2.13
Total variants predicted 4,098,642 4,340,699
Variants annotated in dbSNP 3,626,496 3,419,360
% dbSNP 88.48 78.77
  1. For whole human genomes, a good Ti/Tv ratio is typically considered to be around approximately 2.1 and a high percentage of >80 % of the total found variants in a sample is expected to be found in the dbSNP database (see last row)
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Genome Biology

ISSN: 1474-760X

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