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Table 5 Run-time evaluation and performance evaluation of DeDup compared to SAMtools rmdup on five leprosy and eight human data sets

From: EAGER: efficient ancient genome reconstruction

  Run time in seconds Total # of mapped reads Removed reads
Sample DeDup Rmdup   DeDup Rmdup
3077 53 42 5,737,174 410,045 492,798
SK2 146 66 51,741,310 47,353,377 47,567,518
SK8 124 109 10,597,941 189,328 323,524
Jorgen625 347 335 16,093,580 96,393 699,310
Refshale16 479 371 43,528,407 3,802,345 8,055,585
LBK1 2845 2446 227,603,728 3,138,204 6,708,814
LBK2 2779 2544 230,911,458 2,828,977 6,060,762
LBK3 2809 2440 228,167,295 3,264,858 6,719,244
LBK4 2451 2235 207,956,568 2,762,565 5,929,959
LBK5 2531 2248 208,277,143 2,802,601 5,983,802
LBK6 2572 2255 209,806,794 2,789,629 6,005,481
LBK7 2859 2532 229,979,501 2,466,574 5,293,065
LBK8 2804 2441 228,466,493 3,177,587 6,786,388