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Table 2 Execution times (in seconds) of the EAGER and PALEOMIX pipeline applied to five ancient Mycobacterium leprosy data sets and eight Homo sapiens data sets (LBK1–LBK8) (see Table 1)

From: EAGER: efficient ancient genome reconstruction

Data set EAGER PALEOMIX Factor
LBK1 57,853 90,181 1.55
LBK2 61,066 88,526 1.44
LBK3 58,252 90,032 1.54
LBK4 54,215 82,318 1.51
LBK5 53,676 82,500 1.53
LBK6 54,790 82,090 1.49
LBK7 61,859 83,544 1.35
LBK8 57,782 91,015 1.57
3077 1,066 1,310 1.22
Jorgen625 4,224 13,160 3.11
Refshale16 4,913 9,329 1.89
SK2 5,342 13,196 2.47
SK8 1,508 2,089 1.38
Average 36,657 56,099 1.53
  1. The respective run times have been calculated using the Unix time command, stated are the real times. Execution was performed on the same host system. The parameters of both pipelines have been chosen to be as close to each other as possible, e.g., the mapping parameters have been set to the same values, where this was possible. The factor in the last column refers to the ratio of the PALEOMIX run time versus that of EAGER