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Table 1 PCCs and RMSDs between the random-walk structure and the fitted structures on contact maps with 30 % signal coverage

From: HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure

Method

RMSD

PCC

HSA-Markov

1.26

0.93

HSA

1.44

0.91

BACH

1.45

0.86

ChromSDE

2.44

0.37

MCMC5C

1.50

0.32

ShRec3D

1.59

0.85

PASTIS

2.66

0.09

Autochrom3D

2.48

0.33

TADbit

2.11

0.43

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Genome Biology

ISSN: 1474-760X

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