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Fig. 9 | Genome Biology

Fig. 9

From: HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure

Fig. 9

The 3D distances of RNA PolII ChIA-PET identified loops and non-loops among RNA PolII anchors in the 3D structures reconstructed by different methods on Hi-C contact maps at 1-Mb resolution. a Comparison of HSA and BACH on the raw contact maps in mESC. b Comparison of HSA, ChromSDE and ShRec3D on the normalized contact maps in mESC. c Comparison of HSA and BACH on the raw contact maps in K562. d Comparison of HSA, ChromSDE and ShRec3D on the normalized contact maps in K562. e Comparison of HSA and BACH on the raw contact maps in MCF7. f Comparison of HSA, ChromSDE and ShRec3D on the normalized contact maps in MCF7. HSA joint fitting on the raw contact maps of NcoI and HindIII, HSAnorm joint fitting on the normalized contact maps of NcoI and HindIII, 3D three-dimensional

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