Fig. 8
From: HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure
Box plots of the PCCs between FISH measured distances and predicted distances by different methods on Hi-C contact maps. a Comparison of HSA, BACH and ShRec3D in mESC at 40-kb resolution. b Comparison of HSA, BACH and ShRec3D in GM06990 at 200-kb resolution. The normalized NcoI contact map is not available for mESC at 40-kb resolution. BACH-n BACH fitting on the raw contact maps of NcoI, BACH-h BACH fitting on the raw contact maps of HindIII, HSA joint fitting on the raw contact maps of NcoI and HindIII, HSA-h HSA fitting on the raw contact maps of HindIII, HSA-n HSA fitting on the raw contact maps of NcoI, PCC Pearson correlation coefficient, ShRec3D-h ShRec3D fitting on the normalized contact maps of HindIII, ShRec3D-n ShRec3D fitting on the normalized contact maps of NcoI