Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes

Table 1 Summary of P. vulgaris cv. BAT93 genome assembly

	Whole genome	Scaffolds only
Assembly
Total length	549,604,264	494,957,111
Number of scaffolds/contigs	68,379	9,047
N50(size/number)	433,759 / 324	526,483 / 267
N90(size/number)	2,023 / 8,894	35,958 / 1,484
Range (min-max)	500-3,177,954	2,000-3,177,954
% of Ns	34.96 %	36.99 %
G + C content	38.43 %	36.64 %
Annotation
Number of protein coding (PC) genes	30,491	29,569
Number of PC transcripts	66,634	65,685
Number of small RNAs	2,529	2,271
Number of long non-coding genes	1,033	870
G + C content exonic (for PC genes)	47.57 %	47.70 %
Number of functionally annotated transcripts	62,713 (94.12 %)	62,594 (95.2 %)

The "Whole genome" column corresponds to the entire set of scaffolds and unplaced contigs, while the "Scaffolds only" column corresponds only to the set of scaffolds. Complete annotation statistic are provided in Additional file 1: Table S15

ISSN: 1474-760X