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Table 1 Summary of P. vulgaris cv. BAT93 genome assembly

From: Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes

  Whole genome Scaffolds only
Assembly
Total length 549,604,264 494,957,111
Number of scaffolds/contigs 68,379 9,047
N50(size/number) 433,759 / 324 526,483 / 267
N90(size/number) 2,023 / 8,894 35,958 / 1,484
Range (min-max) 500-3,177,954 2,000-3,177,954
% of Ns 34.96 % 36.99 %
G + C content 38.43 % 36.64 %
Annotation
Number of protein coding (PC) genes 30,491 29,569
Number of PC transcripts 66,634 65,685
Number of small RNAs 2,529 2,271
Number of long non-coding genes 1,033 870
G + C content exonic (for PC genes) 47.57 % 47.70 %
Number of functionally annotated transcripts 62,713 (94.12 %) 62,594 (95.2 %)
  1. The "Whole genome" column corresponds to the entire set of scaffolds and unplaced contigs, while the "Scaffolds only" column corresponds only to the set of scaffolds. Complete annotation statistic are provided in Additional file 1: Table S15