Table 2 Genome-scale DNA methylation analysis of 78 normal tissue samples, 714 primary tumors and 24 metastasis samples (HumanMethylation450 BeadChip) and combined expression/DNA methylation analysis of 208 normal and 675 primary tumor samples (TCGA)
From: Epigenomic analysis detects aberrant super-enhancer DNA methylation in human cancer
Cancer type | Status | Origin | Number of samples | Number of samples TCGA |
|---|---|---|---|---|
Lung | Normal | Primary sample | 26 | 57 |
Colon | Normal | Primary sample | 18 | 41 |
Breast | Normal | Primary sample | 19 | 110 |
Brain (white matter) | Normal | Primary sample | 10 | - |
Blood (CD19+) | Normal | Primary sample | 5 | - |
Lung adenocarcinoma | Cancer | Primary sample | 321 | 216 |
Lung squamous cell carcinoma | Cancer | Primary sample | 120 | - |
Colorectal cancer | Cancer | Primary sample | 103 | 258 |
Colorectal cancer metastasis | Metastasis | Primary sample | 24 | - |
Breast cancer | Cancer | Primary sample | 66 | 201 |
Small cell lung cancer | Cancer | Primary sample | 56 | - |
Glioblastoma | Cancer | Primary sample | 48 | - |