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Table 1 Putative coding Alu exons with significant splicing activities and supporting peptide evidence in proteomics databases

From: The contribution of Alu exons to the human proteome

 

Gene symbol

Gene ID

Exon coordinate (hg19)

Gene description

MaxJC ≥10 ψ ≥0.33

MaxJC ≥10 |Δψ| ≥10 %

In PRIDE

In PeptideAtlas

1

SUGT1

ENSG00000165416

chr13:53235609-53235705

SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)

Yes

Yes

Yes

Yes

2

DNMT1

ENSG00000130816

chr19:10290862-10290910

DNA (cytosine-5-)-methyltransferase 1

Yes

Yes

Yes

Yes

3

C21orf7

ENSG00000156265

chr21:30463988-30464082

Chromosome 21 open reading frame 7

Yes

No

Yes

No

4

ADARB1

ENSG00000197381

chr21:46604388-46604508

Adenosine deaminase, RNA-specific, B1

Yes

Yes

Yes

No

5

ALG8

ENSG00000159063

chr11:77813919-77813994

Asparagine-linked glycosylation 8, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)

Yes

No

Yes

No

6

NEK4

ENSG00000114904

chr3:52783707-52783845

NIMA (never in mitosis gene a)-related kinase 4

Yes

No

Yes

No

7

ZNF415

ENSG00000170954

chr19:53618462-53618560

Zinc finger protein 415

Yes

Yes

Yes

No

8

TPRKB

ENSG00000144034

chr2:73959710-73959827

TP53RK binding protein

Yes

No

Yes

No

9

C21orf7

ENSG00000156265

chr21:30463821-30463897

Chromosome 21 open reading frame 7

Yes

No

Yes

No

10

C11orf80

ENSG00000173715

chr11:66523823-66523976

Chromosome 11 open reading frame 80

Yes

No

Yes

No

11

ZNF573

ENSG00000189144

chr19:38249115-38249236

Zinc finger protein 573

No

Yes

Yes

No

12

MCM3

ENSG00000112118

chr6:52130032-52130183

Minichromosome maintenance complex component 3

No

Yes

Yes

No

13

SLC3A2

ENSG00000168003

chr11:62639048-62639141

Solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2

Yes

No

Yes

No

14

EIF4E

ENSG00000151247

chr4:99807604-99807697

Eukaryotic translation initiation factor 4E

Yes

Yes

Yes

No

15

KCNRG

ENSG00000198553

chr13:50592958-50593056

Potassium channel regulator

Yes

No

Yes

No

16

FAM124B

ENSG00000124019

chr2:225265097-225265222

Family with sequence similarity 124B

Yes

Yes

Yes

No

17

B3GALNT2

ENSG00000162885

chr1:235659495-235659618

Beta-1,3-N-acetylgalactosaminyltransferase 2

Yes

No

Yes

No

18

ZNF195

ENSG00000005801

chr11:3382972-3383119

Zinc finger protein 195

Yes

Yes

Yes

No