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Table 1 Summary of terminal repeat retrotransposons in miniature in 43 sequenced plant genomes

From: Landscape and evolutionary dynamics of terminal repeat retrotransposons in miniature in plant genomes

Plant genome Genus/Family of plant Number of TRIM subfamily Copy number Fraction (%)
Shared between families Family specific Species specific Total Complete Total
Tomato (Solanum lycopersicum) Solanum/Solanaceae 6 4   10 560 9,162 0.32
Currant Tomato (Solanum pimpinellifolium) Solanum/Solanaceae 7 4   11 178 10,199 0.29
Potato (Solanum tuberosum) Solanum/Solanaceae 4 5   9 451 12,473 0.46
Cucumber (Cucumis sativus) Cucumis/Cucurbitaceae 4    4 30 2,816 0.21
Muskmelon (Cucumis melo) Cucumis/Cucurbitaceae 3    3 44 2,072 0.09
Watermelon (Citrullus lanatus) Citrullus/Cucurbitaceae 5    5 228 4,779 0.21
Plum blossom (Prunus mume) Prunus mume/Rosaceae 5 2   7 83 5,719 0.47
Apple (Malus x domestica) Malus/Rosaceae 7    7 2,043 25,835 0.74
Pear (Pyrus bretschneideri) Pyrus/Rosaceae 6 1   7 2,286 20,092 1.26
Strawberry (Fragaria vesca) Fragaria/Rosaceae 4    4 132 1,605 0.18
Marijuana (Cannabis sativa) Cannabis/Cannabaceae 5   1 6 362 14,147 0.55
Lotus (Lotus japonicus) Lotus/Fabaceae 6 2 1 9 379 7,943 0.88
Barrel medic (Medicago truncatula) Medicago/Fabaceae 7 1   8 46 8,416 0.56
Chickpea (Cicer arietinum) Cicer/Faboideae   2   2 102 1,499 0.21
Soybean (Glycine max) Glycine/Faboideae 9 1 6 16 261 10,102 0.25
Pigeon pea (Cajanus cajan) Cajanus/Faboideae 9 3 1 13 840 20,915 0.67
Barbados nut (Jatropha curcas) Jatropha/Euphorbiaceae 5   2 7 177 3,390 0.28
Flax (Linum usitatissimum) Linum/Linaceae 3   2 5 71 4,149 0.33
Castor bean plant (Ricinus communis) Ricinus/Euphorbiaceae 2    2 90 385 0.02
Poplar (Populus trichocarpa) Populus/Salicaceae 5   1 6 839 5,292 0.28
Thale cress (Arabidopsis thaliana) Arabidopsis/Brassicaceae 5 3   8 36 876 0.09
Lyrate rockcress (Arabidopsis lyrata) Arabidopsis/Brassicaceae 9 5   14 259 1,724 0.25
Pallus (Thellungiella salsuginea) Thellungiella/Brassicaceae 9 1   10 98 1,406 0.16
Turnip mustard (Brassica rapa) Brassica/Brassicaceae 9 1   10 269 3,030 0.26
Eutrema parvulum (Thellungiella parvula) Eutrema/Brassicaceae 3 1   4 25 539 0.10
Papaya (Carica papaya) Carica/Caricaceae    1 1 5 897 0.09
Cocoa (Theobroma cacao) Theobroma/Malvaceae    1 1 45 360 0.03
Cotton (Gossypium raimondii) Gossypium/Malvaceae 1 2   3 19 19,008 0.35
Grape (Vitis vinifera) Vitis/Vitaceae 4   1 5 228 8,890 0.34
Sweet orange (Citrus sinensis) Citrus/Rutaceae 2   1 3 30 1,180 0.09
Sorghum (Sorghum bicolor) Sorghum/Poaceae 1 5   6 282 2,922 0.11
Maize (Zea mays) Zea/Poaceae 1 3 3 7 1,361 9,036 0.12
Foxtail (Setaria italica) Setaria/Poaceae 1 4   5 129 1,032 0.07
Rice japonica (Oryza sativa, japonica) Oryza/Poaceae 2 9   11 379 2,911 0.18
Rice indica (Oryza sativa, indica) Oryza/Poaceae 2 9   11 364 3,252 0.19
Brachyantha (Oryza brachyantha) Oryza/Poaceae 2 8 1 11 116 1,506 0.15
Purple false brome (Brachypodium distachyon) Brachypodium/Poaceae 1 2 2 5 75 1,685 0.15
Date palm (Phoenix dactylifera) Phoenix/Arecaceae 2   7 9 777 13,358 0.78
Banana (Musa acuminata) Musa/Musaceae    2 2 126 4,577 0.23
Spikemoss (Selaginella moellendorffii) Selaginella/Selaginellaceae 2   6 8 1,177 10,158 1.19
Green alga (Chlamydomonas reinhardtii) Chlamydomonas/Chlamydomonadaceae 1   5 6 31 1,349 0.21
Volvox (Volvox carteri) Volvox/Volvocaceae    5 5 292 2,052 0.27
Irish moss (Chondrus crispus) Chondrus/Gigartinaceae    3 3 75 422 0.09
Total   159 78 52 289