Fig. 5
From: 3CPET: finding co-factor complexes from ChIA-PET data using a hierarchical Dirichlet process
Characteristics of RNAP-II associated CMNs. a Heat map showing the degree of association of each interaction to a protein family. Each row is a ChIA-PET interaction and each column is a CMG. The blue color indicates little enrichment. The redder the color is, the more it is enriched. b Expression of the genes controlled by each CMN. c The clustering of the expression of genes per CMN indicates that the genes controlled by CMNs 4, 5, and 6 demarcate themselves from the others. d Gene ontology enrichment analysis of the genes controlled by the different RNAP-II associated CMNs. MNN 5 tends to control mRNA metabolite process related genes, while 6 and 4 maintain genes related to chromatin assembly. Genes controlled by CMNs 1, 2, and 3 tend to be more general, and the ones controlled by 7 and 8 are mainly involved in the cell cycle. RPKM reads per kilobase per million