Fig. 3
From: 3CPET: finding co-factor complexes from ChIA-PET data using a hierarchical Dirichlet process
Characteristics of ER-alpha associated CMNs. a Plot showing the size of the different inferred ER-alpha associated CMNs. b Heat map showing the similarity between the CMNs. We notice a small degree of similarity, as the highest value is 16Â %. c Heat map showing the degree of association of each interaction to a protein family. Each row is a ChIA-PET interaction and each column is a CMN. The blue color indicates little enrichment. The redder the color is, the more it is enriched. d Expression of the genes controlled by each CMN. Very distinct expression patterns are noticed for the different groups of controlled genes. e Heat map showing similarity between the expressions of the genes maintained by the different CMNs. RPKM reads per kilobase per million