Fig. 2
From: 3CPET: finding co-factor complexes from ChIA-PET data using a hierarchical Dirichlet process
Constructed network statistics. a This violin plot shows the distribution of the number of TFBSs per interacting DNA region in the ER-alpha mediated interactions. Increasing the region size increases the number of overlapping TFBSs, but, on average, each region contains approximately nine TFs. b Distribution of the number of edges per network for ER-alpha associated interactions. c Distribution of the number of nodes per network for ER-alpha associated interactions. d Distribution of the number of TFBSs per region for RNAP-II associated interactions. On average, each region contains 11 TFs. e Distribution of the number of edges per network for RNAP-II associated interactions. The network sizes show a significant change when increasing the region size. f Distribution of the number of nodes per network for RNAP-II associated interactions. The number of nodes shows a significant change when changing the region size