Transcriptome-wide high-throughput deep m6A-seq reveals unique differential m6A methylation patterns between three organs in Arabidopsis thaliana

Table 8 Potential functions of the 23 transcripts presenting extensively higher m⁶A methylation in roots than that in leaves and flowers in Arabidopsis

Potential functions^a	Gene ID	References^b
Transporter	AT5G52050, AT4G27140, AT4G29030, AT4G28520	[18]
Nutrient reservoir activity	AT4G27140, AT1G03890, AT4G28520	[89] Gruis
Cell proliferation, differentiation or [AQ6]	AT2G36120, AT1G56660, AT4G34410, AT2G22860,	[81, 90, 91]
Defense or stress response	AT4G34410, AT5G07010, AT5G52050, AT2G05940, AT5G42380, AT4G28520	[18, 92–96]
Redox process	AT4G34410, AT1G18300, AT4G12960, AT2G34600	[97]
Carbohydrate metabolism	AT1G27440	[98]
Regulation of transcription	AT4G34410
Protein located in mitochondria or amyloplast	AT1G18300
Protein dephosphorylation or phosphorylation	AT1G48040, AT4G18250, AT5G42370
Signaling transduction	AT4G34410, AT5G07010, AT2G05940, AT2G34600, AT4G18250, AT4G28520	[18, 99, 100]
Unknown protein	AT1G62080, AT1G62000, AT1G62333

^aSuggests the function of RNA itself, for example, rRNA, or the functions in its expressed proteins
^bThe functions of many transcripts were inferred by gene ontology (GO) analysis using the online tool in TAIR (http://www.arabidopsis.org/) and some functions were inferred from the recent publications

ISSN: 1474-760X