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Table 4 Comparison of contact map formats

From: HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

 

Dense format (MB)

Sparse symmetric format (MB)

IMR90_CCL186 1 Mbp

27

49

IMR90_CL186 500 kbp

82

181

IMR90_CCL186 150 kbp

822

911

IMR90_CCL186 40 kbp

12,000

1900

IMR90_CL186 20 kbp

45,000

2600

IMR90_CL186 5 kbp

720,000

4200

  1. Disk space for IMR90_CCL186 genome-wide contact maps generated using either the classical dense format or the sparse symmetric format at different resolutions
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Genome Biology

ISSN: 1474-760X

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