Table 2 HiC-Pro performance and comparison with hiclib
From: HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
Dataset | IMR90 | IMR90 | IMR90 | IMR90_CCL186 |
|---|---|---|---|---|
Number of reads | 397,200,000 | 397,200,000 | 397,200,000 | 1,535,222,082 |
Pipeline | hiclib | HiC-Pro | HiC-Pro parallel | HiC-Pro parallel |
Number of input files | 10 | 10 | 84 | 160 |
Number of jobs | 1 | 1 | 42 | 80 |
Number of CPUs per job | 8 | 8 | 4 | 4 |
Maximum memory | 10 | 7 | 7 | 24 |
Wall time | 28:24 | 14:32 | 02:15 | 11:49 |
 Mapping | 22:03 | 10:31 | 00:21 | 05:56 |
 Filtering | 00:30 | 03:10 | 00:05 | 00:36 |
 Merge |  | 00:20 | 00:18 | 00:50 |
 Contacts maps | 01:45 | 00:15 | 00:15 | 00:42 |
Normalization | 04:06 | 01:16 | 01:16 | 03:49 |