From: HiFive: a tool suite for easy and efficient HiC and 5C data analysis
Method | Normalization algorithm | Can account for distance | Fend-level resolution | Parallelizable |
---|---|---|---|---|
HiFive | Matrix balancing | X | X | X |
Binning | X | X | X | |
Probability | X | X | X | |
HiCPipe | Binning | X | X | |
HiCNorm | Poisson regression | |||
HiCLib | Matrix balancing | X | ||
HiTCa | Poisson regression | |||
Matrix balancing | X | |||
HOMER | Read coverage | X | X | |
Hi-Corrector | Matrix balancing | X | X |