From: HiFive: a tool suite for easy and efficient HiC and 5C data analysis

Method | Normalization algorithm | Can account for distance | Fend-level resolution | Parallelizable |
---|---|---|---|---|

HiFive | Matrix balancing | X | X | X |

Binning | X | X | X | |

Probability | X | X | X | |

HiCPipe | Binning | X | X | |

HiCNorm | Poisson regression | |||

HiCLib | Matrix balancing | X | ||

HiTC^{a}
| Poisson regression | |||

Matrix balancing | X | |||

HOMER | Read coverage | X | X | |

Hi-Corrector | Matrix balancing | X | X |