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Table 1 Computational times for single-cell data sets of various sample and gene set sizes using the approximate version of our method

From: ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis

Data set

# Samples

# Genes

Run time (mins)

Differentiating T cells [3]

182

8.968

4.5

Myoblasts [5]

372

15,529

26.7

Bone marrow [14]

1861

11,115

61.0

11 Populations [15]

249

12,336

9.9