Fig. 2
From: HiCPlotter integrates genomic data with interaction matrices
Adding tracks. Interaction matrices of GM12878, K562, HUVEC, NHEK, and IMR90 cells can be displayed as a heatmap (a) and rotated half matrix (b), with the range of the rotated half matrix being 8 megabases from the diagonal. c Histograms representing DNAseI hypersensitivity (top) and CTCF (middle) and Repli-Seq (bottom) signals for each type. d Tile plot of ChromHMM [20] calls within the represented locus. e Custom domain visualization as triangles. Arrowhead domains identified by Rao et al. [8] (khaki), and TADs reported [7] in human embryonic stem cells (blue) and IMR90 cells (red) are superimposed. An example arrowhead domain is highlighted by green shaded column inside the represented locus