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Table 2 ChIPtig statistics and results of motif finding in the mouse ESC dataset using SEECER

From: De novo ChIP-seq analysis

 

No. ChIPtigs

Mapped ChIPtigs (%)

Motif rank with peak-calling

Motif rank with de novo pipeline

Motif rank with random ChIPtigs

c-MYC

15,987

86.5

1

1

N

CTCF

8,209

39.6

1

N

N

ESRRB

41,620

90.7

1

1

1

KLF4

10,144

73.5

1

1

N

NANOG

19,106

43.7

1

N

N

n-MYC

13,663

67.2

1

N

N

POU5F1

12,939

75.5

1

N

N

SMAD1

9,914

39.8

7

N

N

SOX2

12,797

77.7

1

1

N

STAT3

17,394

84.7

1

1

N

TCFCP2I1

31,701

89.4

N

N

N

ZFX

10,569

80.4

1

1

2

  1. Columns are the same as in Table 1