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Table 4 GO enrichment analysis of Biological Process terms for syntenic genes and non-syntenic genes

From: Small-scale gene duplications played a major role in the recent evolution of wheat chromosome 3B

Syntenic genes
GO ID Term Annotated Significant Expected P value Adjusted P value
GO:0019219 Regulation of nucleobase-containing compound metabolic process 372 229 176.14 4.3e-09 8.2e-07
GO:0019222 Regulation of metabolic process 437 263 206.92 6.2e-09 9.9e-07
GO:0031323 Regulation of cellular metabolic process 382 232 180.88 1.9e-08 2.7e-06
GO:0060255 Regulation of macromolecule metabolic process 404 243 191.3 2.9e-08 3.67e-06
GO:0010468 Regulation of gene expression 378 228 178.98 6.0e-08 5.97e-06
GO:0009889 Regulation of biosynthetic process 373 225 176.62 7.4e-08 5.97e-06
GO:0010556 Regulation of macromolecule biosynthetic process 373 225 176.62 7.4e-08 5.97e-06
GO:0031326 Regulation of cellular biosynthetic process 373 225 176.62 7.4e-08 5.97e-06
GO:0006139 Nucleobase-containing compound metabolic process 695 391 329.09 9.7e-08 6.8e-06
GO:0010467 Gene expression 679 378 321.51 8.5e-07 5.0e-05
GO:0044248 Cellular catabolic process 163 100 77.18 0.00017 0.0090
GO:1901576 Organic substance catabolic process 178 106 84.28 0.00054 2.1639e-02
GO:0044249 Cellular biosynthetic process 742 393 351.34 0.00033 1.5428e-02
GO:0016485 Protein processing 100 64 47.35 0.00050 2.0778e-02
GO:0071704 Organic substance metabolic process 2000 998 947.01 0.00029 1.4790e-02
GO:0009058 Biosynthetic process 750 396 355.13 0.00044 1.9747e-02
GO:0015672 Monovalent inorganic cation transport 41 30 19.41 0.00067 2.3120e-02
GO:0009057 Macromolecule catabolic process 146 87 69.13 0.00163 4.6894e-02
GO:0006812 Cation transport 67 44 31.72 0.00175 4.9087e-02
GO:0019941 Modification-dependent protein catabolic process 97 62 45.93 0.00064 2.3120e-02
GO:0070647 Protein modification by small protein conjugation or removal 99 62 46.88 0.00139 4.1042e-02
Non-syntenic genes
GO ID Term Annotated Significant Expected P value Adjusted P value
GO:0012501 Programmed cell death 172 53 30.12 8.5e-06 0.00374
GO:0043412 Macromolecule modification 663 150 116.1 0.00011 0.030855