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Table 4 GO enrichment analysis of Biological Process terms for syntenic genes and non-syntenic genes

From: Small-scale gene duplications played a major role in the recent evolution of wheat chromosome 3B

Syntenic genes

GO ID

Term

Annotated

Significant

Expected

P value

Adjusted P value

GO:0019219

Regulation of nucleobase-containing compound metabolic process

372

229

176.14

4.3e-09

8.2e-07

GO:0019222

Regulation of metabolic process

437

263

206.92

6.2e-09

9.9e-07

GO:0031323

Regulation of cellular metabolic process

382

232

180.88

1.9e-08

2.7e-06

GO:0060255

Regulation of macromolecule metabolic process

404

243

191.3

2.9e-08

3.67e-06

GO:0010468

Regulation of gene expression

378

228

178.98

6.0e-08

5.97e-06

GO:0009889

Regulation of biosynthetic process

373

225

176.62

7.4e-08

5.97e-06

GO:0010556

Regulation of macromolecule biosynthetic process

373

225

176.62

7.4e-08

5.97e-06

GO:0031326

Regulation of cellular biosynthetic process

373

225

176.62

7.4e-08

5.97e-06

GO:0006139

Nucleobase-containing compound metabolic process

695

391

329.09

9.7e-08

6.8e-06

GO:0010467

Gene expression

679

378

321.51

8.5e-07

5.0e-05

GO:0044248

Cellular catabolic process

163

100

77.18

0.00017

0.0090

GO:1901576

Organic substance catabolic process

178

106

84.28

0.00054

2.1639e-02

GO:0044249

Cellular biosynthetic process

742

393

351.34

0.00033

1.5428e-02

GO:0016485

Protein processing

100

64

47.35

0.00050

2.0778e-02

GO:0071704

Organic substance metabolic process

2000

998

947.01

0.00029

1.4790e-02

GO:0009058

Biosynthetic process

750

396

355.13

0.00044

1.9747e-02

GO:0015672

Monovalent inorganic cation transport

41

30

19.41

0.00067

2.3120e-02

GO:0009057

Macromolecule catabolic process

146

87

69.13

0.00163

4.6894e-02

GO:0006812

Cation transport

67

44

31.72

0.00175

4.9087e-02

GO:0019941

Modification-dependent protein catabolic process

97

62

45.93

0.00064

2.3120e-02

GO:0070647

Protein modification by small protein conjugation or removal

99

62

46.88

0.00139

4.1042e-02

Non-syntenic genes

GO ID

Term

Annotated

Significant

Expected

P value

Adjusted P value

GO:0012501

Programmed cell death

172

53

30.12

8.5e-06

0.00374

GO:0043412

Macromolecule modification

663

150

116.1

0.00011

0.030855