Fig. 3
From: Comparison of Hi-C results using in-solution versus in-nucleus ligation
Reproducibility of cis-chromosomal interactions between replicates. Cis-chromosomal interaction frequency density as a function of the genomic distance for in-solution ligation (ISL; blue) and in-nucleus ligation (INL; red), for mouse foetal liver (a) and human ES cell samples (b). The error bars show one standard deviation from the mean of all chromosomes. c Top panel: Spearman correlation coefficient between replicates as a function of genomic distance. Bottom panel: deviation from expected slope (DES) as a function of genomic distance