Table 6 Hi-C data sources
From: Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data
Dataset | Cell | Cell | Accession | Reference |
|---|---|---|---|---|
| Â | line | type | number | Â |
HiC-EBV-2009 | GM06990 | LCL (EBV) | [GEO:GSE18199] | [1] |
HiC-EBV-2013 | GM12878 | LCL (EBV) | [GEO:GSE48592] | [46] |
HiC-EBV-2014 | GM12878 | LCL (EBV) | [GEO:GSE63525] | [7] |
HiC-IMR90-2013 | IMR90 | Fibroblast (lung) | [GEO:GSE43070] | [4] |
HiC-IMR90-2014 | IMR90 | Fibroblast (lung) | [GEO:GSE63525] | [7] |
HiC-fibro-skin | – | Fibroblast (skin) | [GEO:GSE41763] | [45] |
HiC-fibro-HFF1 | HFF-1 | Fibroblast (skin) | E-MTAB-1948 | [5] |
HiC-K562-2009 | K562 | Leukemia | [GEO:GSE18199] | [1] |
HiC-K562-2014 | K562 | Leukemia | [GEO:GSE63525] | [7] |
HiC-mESC-2012 | J1 | mESC | [GEO:GSE35156] | [3] |