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Table 5 Methylation data sources

From: Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data

Dataset Cell type Number, n Platform Accession number Reference
450 k-fibroblast Fibroblast (skin) 62 450k [GEO:GSE52025] [19]
450 k-EBV LCL (EBV) 288 450k [GEO:GSE36369] [17]
450 k-blood Whole blood 305 450k [GEO:GSE54882] [24]
27 k-EBV Vancouver LCL (EBV) 180 27k [GEO:GSE27146] [36]
27 k-EBV London LCL (EBV) 77 27k [GEO:GSE26133] [37]
450 k-PRAD-normal Prostate (normal) 49 450 k TCGA [14]
450 k-PRAD-cancer Prostate (cancer) 340 450 k TCGA [14]
PMDs-IMR90 Fibroblast (lung) 1 MethylC-Seq Salk Institute [40]
EBV hypomethylation blocks LCL (EBV) 1 WGBS [GEO:GSE49629] [23]