Table 1 Correlation and agreement between Hi-C and 450 k-based eigenvector estimates of genome compartments. Thresholding refers to excluding genomic bins where the entries of the relevant eigenvector have an absolute value less than 0.01
From: Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data
| Â | Â | Chromosome 14 | Genome | ||
|---|---|---|---|---|---|
No threshold | |||||
| Â | Correlation | 0.85 | 0.75 | 0.70 | 0.74 |
| Â | Agreement | 83.7 % | 79.1 % | 79.0 % | 79.5 % |
| Â | Bins retained | 100 % | 100 % | 100 % | 100 % |
Threshold, methylation | |||||
| Â | Correlation | 0.87 | 0.78 | 0.74 | 0.77 |
| Â | Agreement | 88.8 % | 83.4 % | 87.9 % | 87.9 % |
| Â | Bins retained | 86 % | 85 % | 78 % | 79 % |
Threshold, methylation and Hi-C | |||||
| Â | Correlation | 0.89 | 0.84 | 0.77 | 0.81 |
| Â | Agreement | 93.0 % | 90.5 % | 92.6 % | 92.8 % |
| Â | Bins retained | 76 % | 67 % | 66 % | 64 % |