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Table 1 Correlation and agreement between Hi-C and 450 k-based eigenvector estimates of genome compartments. Thresholding refers to excluding genomic bins where the entries of the relevant eigenvector have an absolute value less than 0.01

From: Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data

   Chromosome 14 Genome
No threshold
  Correlation 0.85 0.75 0.70 0.74
  Agreement 83.7 % 79.1 % 79.0 % 79.5 %
  Bins retained 100 % 100 % 100 % 100 %
Threshold, methylation
  Correlation 0.87 0.78 0.74 0.77
  Agreement 88.8 % 83.4 % 87.9 % 87.9 %
  Bins retained 86 % 85 % 78 % 79 %
Threshold, methylation and Hi-C
  Correlation 0.89 0.84 0.77 0.81
  Agreement 93.0 % 90.5 % 92.6 % 92.8 %
  Bins retained 76 % 67 % 66 % 64 %