Fig. 13
From: Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data
Estimated A/B compartments across several human cancers. The figure displays data on all of chromosome 14 at 100-kb resolution. Each track represents the first eigenvector of the methylation correlation matrix for the corresponding dataset. The datasets depicted in (a) and (b) are the 450 k-EBV and 450 k-fibroblast datasets. The datasets in (c–m) are cancer samples from TCGA for different cancers: (c) bladder urothelial carcinoma (BLCA), (d) breast invasive carcinoma (BRCA), (e) colon adenocarcinoma (COAD), (f) head and neck squamous cell carcinoma (HNSC), (g) kidney renal clear cell carcinoma (KIRC), (h) kidney renal papillary cell carcinoma (KIRP), (i) liver hepatocellular carcinoma (LIHC), (j) lung adenocarcinoma (LUAD), (k) lung squamous cell carcinoma (LUSC), (l) prostate adenocarcinoma (PRAD), and (m) uterine corpus endometrial carcinoma (UCEC)