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Table 8 Number of predicted genes in sugar beet and spinach

From: Exploiting single-molecule transcript sequencing for eukaryotic gene prediction

 

Gene sets sugar beet

Gene set spinach

 

Annotation in RefBeet-1.1

BeetSet-2

SpiSet-1

100 % evidence

16,508

17,434

12,664

1-99 % evidence

15,556

8,975

7,868

0 % evidence

80,439

13,181

19,777

0 % evidence and 1:1 orthologya

n.a.

514

1,171

Final gene number

27,421b

26,923c

21,703c

  1. aOne-to-one orthology identified between BeetSet-2 and SpiSet-1 predictions
  2. bGenes annotated in RefBeet-1.1 with 1-100 % expression evidence excluding those with transposable element homology
  3. cSum of genes with 1-100 % expression support and one-to-one orthologs