Skip to main content

Table 2 SMRT reads covering full ORFs

From: Exploiting single-molecule transcript sequencing for eukaryotic gene prediction

Dataset SMRT reads overlapping with full-ORF sugar beet genesa SMRT reads fully covering ORFs (%) SMRT reads fully covering ORFs and at least 10 UTR bases (%)
CCS 1-2 kb 17,717 94.5 94.2
CCS 2-3 kb 14,846 91.6 91.2
CCS 3 kb 17,706 92.8 92.5
Unmerged subreads 1-2 kb 45,678 41.5 40.7
Unmerged subreads 2-3 kb 70,792 33.6 32.9
Unmerged subreads 3 kb 77,803 34.6 33.9
  1. aInterspecific comparison with four other eudicot plants resulted in 7,286 sugar beet genes with bona fide complete ORFs