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Table 2 SMRT reads covering full ORFs

From: Exploiting single-molecule transcript sequencing for eukaryotic gene prediction

Dataset

SMRT reads overlapping with full-ORF sugar beet genesa

SMRT reads fully covering ORFs (%)

SMRT reads fully covering ORFs and at least 10 UTR bases (%)

CCS 1-2 kb

17,717

94.5

94.2

CCS 2-3 kb

14,846

91.6

91.2

CCS 3 kb

17,706

92.8

92.5

Unmerged subreads 1-2 kb

45,678

41.5

40.7

Unmerged subreads 2-3 kb

70,792

33.6

32.9

Unmerged subreads 3 kb

77,803

34.6

33.9

  1. aInterspecific comparison with four other eudicot plants resulted in 7,286 sugar beet genes with bona fide complete ORFs