Skip to main content
Fig. 5 | Genome Biology

Fig. 5

From: Exploiting single-molecule transcript sequencing for eukaryotic gene prediction

Fig. 5

mRNA-seq coverage of sugar beet genes. Each dot represents one sugar beet gene. x-axis: mRNA-seq coverage as in the annotation based on the RefBeet-1.1 assembly; y-axis: mRNA-seq coverage for BeetSet-2 genes. The mRNA-seq data used in the RefBeet-1.1 annotation consisted chiefly of Illumina reads from genotype KWS2320, plus reads from other accessions (total amount: 616.3 million reads). The mRNA-seq data used to generate BeetSet-2 included KWS2320 reads plus isogenic reads from plants grown under stress conditions and their controls (total amount: 923.8 million reads). The overall mRNA-seq coverage increased in BeetSet-2, which improved the prediction of lowly expressed genes

Back to article page