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Table 2 Fosmids probes used for FISH

From: Estrogen-induced chromatin decondensation and nuclear re-organization linked to regional epigenetic regulation in breast cancer

Chromosomal region Whitehead probe name Other probe name Start (bp) End (bp) Midpoint (bp) Separation between probe pair midpoints (kb)
16p11.2 RER (sub region 1) W12-1584N4 G248P86075G2 29,664,946 29,703,636 29,684,291 344
W12-1754H9 G248P8656D5 30,010,045 30,046,946 30,028,496
16p11.2 RER (sub region 2) W12-1754H9 G248P8656D5 30,010,045 30,046,946 30,028,496 373
W12-906G10 G248P8190D5 30,379,727 30,424,227 30,401,977
16p11.2 RER (sub region 3) W12-906G10 G248P8190D5 30,379,727 30,424,227 30,401,977 405
W12-497E18 G248P8178C9 30,788,769 30,824,965 30,806,867
16p11.2 RER (sub region 4) W12-497E18 G248P8178C9 30,788,769 30,824,965 30,806,867 380
W12-2222M4 G248P87014G2 31,166,763 31,207,277 31,187,020
16p11.2 (nonRER control) W12-3081O2 G248P89434H1 28,483,429 28,519,288 28,501,359 418
W12-2889N9 G248P89117G5 28,899,528 28,938,582 28,919,055
11p15.4 (nonRER control) W12-528M6 G248P8086G3 4,961,240 4,999,789 4,980,515 493
W12-2033J5 G248P85537E3 5,453,348 5,494,460 5,473,904
  1. Probe names are from the Whitehead Fosmid database [58]. Alternative probe names can be used to view fosmids on the UCSC genome browser. All genome locations (base pairs) are from the hg19 assembly of the human genome