Estrogen-induced chromatin decondensation and nuclear re-organization linked to regional epigenetic regulation in breast cancer

Table 2 Fosmids probes used for FISH

Chromosomal region	Whitehead probe name	Other probe name	Start (bp)	End (bp)	Midpoint (bp)	Separation between probe pair midpoints (kb)
16p11.2 RER (sub region 1)	W12-1584N4	G248P86075G2	29,664,946	29,703,636	29,684,291	344
16p11.2 RER (sub region 1)	W12-1754H9	G248P8656D5	30,010,045	30,046,946	30,028,496	344
16p11.2 RER (sub region 2)	W12-1754H9	G248P8656D5	30,010,045	30,046,946	30,028,496	373
16p11.2 RER (sub region 2)	W12-906G10	G248P8190D5	30,379,727	30,424,227	30,401,977	373
16p11.2 RER (sub region 3)	W12-906G10	G248P8190D5	30,379,727	30,424,227	30,401,977	405
16p11.2 RER (sub region 3)	W12-497E18	G248P8178C9	30,788,769	30,824,965	30,806,867	405
16p11.2 RER (sub region 4)	W12-497E18	G248P8178C9	30,788,769	30,824,965	30,806,867	380
16p11.2 RER (sub region 4)	W12-2222M4	G248P87014G2	31,166,763	31,207,277	31,187,020	380
16p11.2 (nonRER control)	W12-3081O2	G248P89434H1	28,483,429	28,519,288	28,501,359	418
16p11.2 (nonRER control)	W12-2889N9	G248P89117G5	28,899,528	28,938,582	28,919,055	418
11p15.4 (nonRER control)	W12-528M6	G248P8086G3	4,961,240	4,999,789	4,980,515	493
11p15.4 (nonRER control)	W12-2033J5	G248P85537E3	5,453,348	5,494,460	5,473,904	493

Probe names are from the Whitehead Fosmid database [58]. Alternative probe names can be used to view fosmids on the UCSC genome browser. All genome locations (base pairs) are from the hg19 assembly of the human genome