fGR | Functional categories | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Region number+ | End5 | End3 | Span (bp) | Number of fGIs | RI | GI | Phage | Metabolic | House-keeping | Extracellular polysaccharide | Description of largest fGI-encoded functions£ | pAICU ¶ | Flanking† core ACICU loci | fGR id‡ | Largest fGI assemblies§ |
K | 68497 | 82812 | 14316 | 17 | X | K-antigen | 1 | 00074/00087 | CL_INS_4 | 105 | |||||
N | 152392 | 155346 | 2955 | 3 | X | Novel; acetyltransferase, fragment of composite IS26 transposon | - | 00139 (acylCS)/00147 | CL_INS_12 | 791* | |||||
1 | 243163 | 350187 | 107025 | 38 | X | comM, aminoglycoside/hydroxyurea antibiotic resistance kinase, streptomycin 3″-kinase, transporter, major facilitator family protein | 3 | 00219/00242 | CL_INS_20 | 58* | |||||
2 | 702940 | 747393 | 44454 | 7 | X | Copper/heavy metal resistance | - | 00567/00568 | CL_INS_49 | 16 | |||||
3 | 906910 | 938373 | 31464 | 9 | X | Phage 1 in ACICU, but no core phage genes | 6 | 00684/00702 | CL_INS_65 | 64 | |||||
4 | 1103071 | 1189920 | 86850 | 62 | X | Toxin/anti-toxin system, large terminase, methylase | - | 00861/00869 | CL_INS_74 | 9 | |||||
5 | 1401709 | 1425417 | 23709 | 43 | X | phage protein F-like | - | 01048/01056 | CL_INS_93 | 29 | |||||
6 | 1425814 | 1449657 | 23844 | 31 | X | Arc-like protein, lysozyme | CL_INS_94 | 76 | |||||||
7 | 1472644 | 1510578 | 37935 | 16 | X | Major capsid, prohead protease, portal, large and small terminase, head-tail adaptor, tail protein, lysozyme, antitermination protein Q, integrase | CL_INS_97 | 14 | |||||||
8 | 1561693 | 1595358 | 33666 | 11 | X | Zeta toxin, phage/plasmid-like protein, recombinase | - | 01106/01110 | CL_INS_101 | 52 | |||||
9 | 1603966 | 1639890 | 35925 | 2 | X | bla, hlyD, phenylpropanoid catabolism, porin, acetaldehyde dehydrogenase; ompA-like, yadA-like | - | 01115/01116 | CL_INS_104 | 38, 260* | |||||
10 | 1666240 | 1704336 | 38097 | 7 | X | Aldehyde dehydrogenase, vanillin dehydrogenase, porins, transporters | - | 01136 (astA)/01153 | CL_INS_107 | 28 | |||||
11 | 1818532 | 1852125 | 33594 | 12 | X | Lysis protein, tail, tail assembly, tape measure | - | 01222/01224 | CL_INS_120 | 50 | |||||
12 | 1928539 | 1956234 | 27696 | 2 | X | bla, hlyD, phenylpropanoid catabolism, porin, acetaldehyde dehydrogenase | - | 01256/01257 | CL_INS_128 | 38 | |||||
13 | 2402650 | 2440626 | 37977 | 32 | X | Major capsid, prohead protease, portal, large and small terminase, head-tail adaptor, tail protein, lysozyme, antitermination protein Q, integrase | - | 01626/01627 | CL_INS_164 | 14 | |||||
14 | 2664622 | 2705871 | 41250 | 11 | X | Inovirus-like; zonula occludens toxin, coat protein B, replication protein | - | 01813/01815 | CL_INS_180 | 110 | |||||
15 | 2716186 | 2754267 | 38082 | 6 | X | X | tatABC, TonB receptors, ABC transporters | - | 01824/01827 | CL_INS_182 | 33 | ||||
16 | 2802271 | 2828589 | 26319 | 15 | X | Phage-associated protein, phage protein F-like, site-specific recombinase | - | 01849/01864 | CL_INS_187 | 40 | |||||
17 | 2850997 | 2872608 | 21612 | 2 | X | Oxidoreductase, aldehyde dehydrogenase | - | 01886/01887 | CL_INS_190 | 62 | |||||
18 | 2874184 | 2899845 | 25662 | 2 | X | X | tRNA ligase, aldehyde dehydrogenases, Homoprotocatechuate/hydroxyphenylacetate degradation, transporter | - | 01887/01888 | CL_INS_191 | 37 | ||||
19 | 2990911 | 3011439 | 20529 | 4 | X | Medium chain fatty acid ligase, transporter, oxidoreductase | - | 01936/01949 | CL_INS_199 | 121 | |||||
20 | 3143872 | 3176853 | 32982 | 7 | X | Mu-like; Gam-like protein, terminase, methylase, Mu protein F-like, Mu-like major head, tail sheath-like, Mu Gp45, baseplate J-like | - | 02064/02066 | CL_INS_211 | 15 | |||||
21 | 3250042 | 3277383 | 27342 | 12 | X | lysozyme, baseplate, phage protein F-like, phage-associated protein | - | 02139/02236 | CL_INS_216 | 25 | |||||
22 | 3465244 | 3487854 | 22611 | 3 | X | Novel 7.8 kb region; salicylate monooxygenase | - | 02398/02399 (acetylT) | CL_INS_237 | 338* | |||||
23 | 3569029 | 3597828 | 28800 | 6 | X | Phage | - | 02457/02470 | CL_INS_246 | 19 | |||||
24 | 3790117 | 3828819 | 38703 | 12 | X | Rubredoxin, MFS transporter, prevent host death, aldehyde dehydrogenase, methylmalonate-semialdehyde dehydrogenase | 29 | 02595/02624 | CL_INS_259 | 35 | |||||
25 | 4223758 | 4247211 | 23454 | 6 | X | Integrase, CII, large and small terminase, portal, prohead protease, major capsid, head-tail connector, head-tail joining, tail | - | 03014/03015 | CL_INS_287 | 59 | |||||
O | 4387696 | 4395870 | 8175 | 5 | X | O-antigen | - | 03146/03149 | CL_INS_297 | 168 | |||||
26 | 4420246 | 4450038 | 29793 | 6 | X | P2-like; integrase, tape measure, tail proteins, baseplate J-like, lysozyme, baseplate assembly, large and small terminase, major capsid, capsid scaffolding protein, portal | - | 03157/03161 | CL_INS_299 | 17 | |||||
27 | 4818799 | 4844895 | 26097 | 2 | X | X | Novel; bla, Tn7, sulfur transport, fur, tRNA ligase | - | 03502/03503 | CL_INS_334 | 39 | ||||
28 | 4960555 | 4989495 | 28941 | 5 | X | ompA-like protein, Tnp | - | 03594/03595 | CL_INS_346 | 148 |