Skip to main content

Table 1 Select genomic features and metadata of A. baumannii genomes sequenced in this study

From: A novel method of consensus pan-chromosome assembly and large-scale comparative analysis reveal the highly flexible pan-genome of Acinetobacter baumannii

Number

Strain

Accession

G+C %

Finishing status†

Number of contigs

Number of proteins

Length (bp)

MLST ST

MLST allelic profile§

Origin/site

Country

City

Year

Reference

1)

OIFC137

AFDK00000000

36.9

IHQD

4

3871

4,081,420

3

3-3-2-2-3-1-3

Catheter tip

USA

Washington, DC

2003

 

2)

OIFC032

AFCZ00000000

40.8

IHQD

4

3718

3,893,886

32

1-1-2-2-3-4-4

Wound

Germany

Landstuhl

2003

[8]

3)

OIFC109

ALAL00000000

38.4

IHQD

13

3945

4,107,121

3

3-3-2-2-3-1-3

Right residual limb wound

USA

Washington, DC

2003

[8]

4)

OIFC143

AFDL00000000

37.3

IHQD

8

4265

4,441,327

25

3-3-2-4-7-2-4

Thigh wound

USA

Washington, DC

2003

 

5)

OIFC189

AFDM00000000

44.1

IHQD

10

3849

4,043,115

2

2-2-2-2-2-2-2

Wound

USA

Bethesda, MD

2003

[88]

6)

Canada BC-5

AFDN00000000

38.0

IHQD

3

3787

3,998,016

1

1-1-1-1-5-1-1

Clinical isolate

Canada*

NA

2007

 

7)

Naval-17

AFDO00000000

42.9

IHQD

21

3848

4,009,964

2

2-2-2-2-2-2-2

Wound

USA

Bethesda, MD

2006

[87]

8)

Naval-18

AFDA00000000

37.6

IHQD

11

4406

4,454,613

25

3-3-2-4-7-2-4

Wound

USA

Bethesda, MD

2006

[87]

9)

Naval-81

AFDB00000000

36.5

IHQD

5

3981

4,080,872

3

3-3-2-2-3-1-3

Blood

USA

Bethesda, MD

2006

 

10)

IS-123

ALII00000000

38.7

IHQD

20

4013

4,063,081

3

3-3-2-2-3-1-3

Wound

Iraq

Baghdad

2009

 

11)

OIFC074

AMDE00000000

40.5

HQD

66

3815

3,935,888

19

1-2-1-1-5-1-1

Clinical isolate

Germany

Landstuhl

2003

 

12)

OIFC098

AMDF00000000

39.5

HQD

72

3659

3,812,112

10

1-3-2-1-4-4-4

Clinical isolate

Germany

Landstuhl

2003

 

13)

OIFC180

AMDQ00000000

40.1

HQD

141

3942

3,986,823

2

2-2-2-2-2-2-2

Clinical isolate

USA

NA

2003

 

14)

Naval-13

AMDR00000000

40.6

HQD

64

3948

4,107,737

3

3-3-2-2-3-1-3

Wound

USA

Bethesda, MD

2006

[87]

15)

IS-235

AMEI00000000

41.0

HQD

76

3981

4,060,387

1

1-1-1-1-5-1-1

Blood

Iraq

Baghdad

2008

[88]

16)

IS-251

AMEJ00000000

39.6

HQD

72

3908

4,007,286

1

1-1-1-1-5-1-1

Respiratory tract

Iraq

Baghdad

2008

[88]

17)

OIFC0162

AMFH00000000

39.4

HQD

55

3856

4,078,399

412

1-52-2-2-67-4-5

Trachea

USA

Washington, DC

2003

[8]

18)

Naval-72

AMFI00000000

41.2

HQD

52

3607

3,840,453

405

5-3-16-4-29-1-60

Wound

USA

Bethesda, MD

2006

[87]

19)

Naval-83

AMFK00000000

39.7

HQD

103

4000

4,106,603

20

3-1-1-1-5-1-1

Wound

USA

Bethesda, MD

2006

[87]

20)

OIFC110

AMFL00000000

40.3

HQD

53

3818

3,981,666

515

56-3-2-2-9-4-14

Clinical isolate

Germany

Landstuhl

2003

 

21)

IS-143

AMGE00000000

41.1

HQD

93

3883

4,020,019

414

2-2-2-2-2-37-2

Wound

Iraq

Baghdad

2008

 

22)

IS-116

AMGF00000000

40.0

HQD

40

3779

3,952,511

136

3-2-19-25-5-2-5

Wound

Iraq

Baghdad

2008

 

23)

WC-692

AMGG00000000

39.7

HQD

79

4004

4,183,446

513

56-3-55-2-9-4-14

Intact skin surface

Iraq

NA

2008

 

24)

IS-58

AMGH00000000

40.9

HQD

61

3944

4,063,888

1

1-1-1-1-5-1-1

Respiratory tract

Iraq

Baghdad

2008

[88]

25)

WC-487

AMZR00000000

39.5

HQD

121

3994

4,115,076

410

20-26-26-14-26-16-23

Skin

USA

Bethesda, MD

2008

 

26)

WC-348

AMZT00000000

39.2

HQD

61

3897

4,108,488

412

1-52-2-2-67-4-5

Intact skin surface

Iraq

NA

2008

 

27)

Naval-113

AMZU01000000

49.7

HQD

130

4002

4,095,626

2

2-2-2-2-2-2-2

Wound

USA

Bethesda, MD

2006

[87]

28)

Naval-82

AMSW00000000

38.2

HQD

197

3969

3,908,929

428

3-1-2-3-6-1-16

Blood

USA

Bethesda, MD

2006

[87]

29)

Naval-2

AMSX00000000

39.5

HQD

114

4074

4,126,550

2

2-2-2-2-2-2-2

Blood

USA

Bethesda, MD

2006

[87]

30)

Naval-21

AMSY00000000

40.0

HQD

75

3829

3,923,796

19

1-2-1-1-5-1-1

Wound

USA

Washington, DC

2006

[87]

31)

Canada BC1

AMSZ00000000

39.7

HQD

66

3825

3,936,404

1

1-1-1-1-5-1-1

Nosocomial infection

Canada

NA

2007

 

32)

WC-A-694

AMTA00000000

39.7

HQD

82

3830

4,008,103

3

3-3-2-2-3-1-3

Clinical isolate

USA

Washington, DC

2008

 

33)

OIFC035

AMTB00000000

43.0

HQD

44

3741

3,972,611

403

3-2-6-1-3-4-59

Groin wound

USA

Washington, DC

2003

 

34)

Naval-57

AMFP00000000

40.7

HQD

138

3838

3,953,596

155

3-2-2-2-44-4-4

Wound

USA

Bethesda, MD

2006

 

35)

OIFC087

AMFS00000000

39.1

HQD

96

3922

4,004,682

32

1-1-2-2-3-4-4

Perineum

USA

Washington, DC

2003

 

36)

OIFC099

AMFT00000000

40.1

HQD

75

3748

3,918,177

32

1-1-2-2-3-4-4

Environmental sample

USA

Washington, DC

2003

[8]

37)

WC-A-92

AMFU00000000

38.1

HQD

151

3802

3,838,812

431

1-4-2-1-70-1-2

Clinical isolate

USA

Washington, DC

2007

 

38)

OIFC065

AMFV00000000

39.5

HQD

54

3893

4,029,646

136

3-2-19-25-5-2-5

Left leg

USA

Washington, DC

2003

 

39)

OIFC047

AMFW00000000

39.2

HQD

39

3505

3,740,684

Novel

1-75-2-2-67-1-2

Perineum

USA

Washington, DC

2003

 

40)

OIFC338

AMFX00000000

40.1

HQD

108

4081

4,155,681

2

2-2-2-2-2-2-2

Clinical isolate

USA

Washington, DC

2003

 

41)

OIFC111

AMFY00000000

40.8

HQD

44

3732

3,988,061

49

3-3-6-2-3-1-5

Perineum

USA

Washington, DC

2003

 

42)

Naval-78

AMFZ00000000

39.9

HQD

112

3950

4,053,379

2

2-2-2-2-2-2-2

Wound

USA

Bethesda, MD

2006

[87]

43)

AA-014

AMGA00000000

39.4

HQD

61

3618

3,857,932

158

41-42-13-1-5-4-14

Wound

Iraq

Al Anbar

2008

 

44)

MRSN 3405

JPIA00000000

38.3

IHQD

64

3958

4,082,715

94

1-2-2-1-5-1-1

Wound

USA

Washington, DC

2011

[15]

45)

MRSN 3527

JPHZ00000000

38.7

IHQD

46

4101

4,206,186

81

1-1-1-1-5-1-2

Wound

USA

Washington, DC

2011

[15]

46)

MRSN 3942

JPHY00000000

38.4

IHQD

69

3849

3.975,719

94

1-2-2-1-5-1-1

Wound

USA

Washington, DC

2011

[15]

47)

MRSN 4106

JPHX00000000

38.6

IHQD

62

3824

3,952,684

94

1-2-2-1-5-1-1

Wound

USA

Washington, DC

2011

[15]

48)

MRSN 58

JPHW00000000

39.8

IHQD

40

3866

3,974,176

1

1-1-1-1-5-1-1

Wound

USA

Washington, DC

2010

[20]

49)

MRSN 7339‡

JPHV00000000

39.3

IHQD

34

3787

3,955,466

1

1-1-1-1-5-1-1

Wound

USA

Washington, DC

2004

 

50)

MRSN 7341‡

JPIB00000000

39.4

IHQD

52

3766

3,911,280

2

2-2-2-2-2-2-2

Respiratory

USA

Washington, DC

2004

 
  1. †Improved high-quality draft (IHQD); high-quality draft (HQD)
  2. § cpn60:fusA:gltA:pyrG:recA:rplB:rpoB
  3. *Sample isolated from a soldier evacuated via Landstuhl Regional Medical Center
  4. ‡Isolated from the same individual
  5. MLST multilocus sequence typing, NA not available, NI not identified