Table 1 Genes escaping XCI in any of the three NPC lines in comparison with other studies

Kdm6a/Utx^a

+

17.7

−0.3

−0.4

−0.8

*

*

*

*

*

UTX/DUSP21 (9/9)

4

Utp14a

+

45.6

−0.3

−1.7

−0.8

*

*

UTP14A (3/9)

4

Eda2r

-

94.6

−1.9

−2.0

−2.3

XEDAR (4/9)

3

Ogt

+

98.8

0.2

−0.9

0.4

*

*

OGT (0/9)

3

Xist

-

100.7

8.7

6.5

10.2

*

*

*

*

*

XIST (9/9)

4

Ftx/ B230206F22Rik

-

100.8

−1.7

−0.8

−1.3

*

*

* [32]

NA

3

5530601H04Rik

-

102.3

0.2

−0.2

−0.4

*

*

* [34]

NA

2

2610029G23Rik

+

102.3

−0.4

−0.6

−0.4

*

*

*

*

* [34]

NA

3

Kdm5c/Jarid1c

+

148.7

−1.1

−0.7

−1.7

*

*

*

*

*

NA

3

Nkap

+

34.7

−0.6

−0.3

−8.2

*

*

NKAP (1/9)

3

Hcfc1

-

71.2

−2.5

−2.9

-

*

HCFC (6/9)

3

Vbp1

+

72.8

−2.3

−3.0

-

*

VBP1 (1/9)

3

Jpx/2010000I03Rik/Enox

+

100.7

−1.1

−1.3

NA ^b

*

* [36]

NA

NA

Chm

-

110.3

0.2

−2.9

−3.0

*

CHM (6/9)

4

Gpm6b

+

162.8

−0.4

−0.9

−3.6

*

*

GPM6B (8/9)

NA

Ofd1

-

162.9

−3.2

−0.2

−7.5

OFD1 (6/6)

3

Mecp2

-

71.3

−1.8

-

−2.3

MECP2 (0/9)

2

Ercc6l

-

99.4

−0.4

-

−0.6

FLJ20105 (2/9)

2

Ndufb11

-

20.2

−0.5

-

-

P17.3 (0/9)

NA

A230072C01Rik

+

20.5

−2.9

-

-

NA

2

6720401G13Rik

-

48.0

−2.8

-

−5.4

*

*

NA

1

Fmr1

+

65.9

−2.4

-

-

*

FMR1 (1/9)

3

Trmt2b

-

130.8

−0.5

-

−3.9

FLJ12687 (0/9)

NA

Rbm41

-

136.5

−2.4

-

−5.8

FLJ11016 (3/9)

1

Figf

+

160.9

−2.2

−3.8

-

NA

4

Mmgt1

-

53.9

-

−0.5

-

NA

Siah1b

-

160.5

-

−1.6

−5.4

*

NA

Mid1

+

166.3

−4.9

−0.4

−7.1

*

*

*

MID1 (1/9)

Sox3

-

58.1

-

0.3

NA

Taf1

+

98.7

−1.1

−2.9

−0.6

*

*

TAF1 (0/5)

Gm5643/Hnrnpa1l2

+

138.7

−1.2

2.6

−1.6

NA

Zrsr2

-

160.4

-

−5.9

−2.0

*

NA

Region 1

 Gpkow^a

+

7.27

−2.4

−1.2

−8.4

GPKOW (0/9)

4

 Wdr45

+

7.30

−3.0

0.0

-

WDRX1 (0/9)

 Tcfe3

+

7.34

−1.9

−0.8

−6.7

TFE3 (0/9)

4

 Gripap1^a

+

7.37

−1.1

−1.5

−6.3

*

GRIPAP1 (1/9)

4

 Slc35a2

+

7.46

−1.6

1.3

-

*

SLC35A2 (0/9)

 Timm17b

+

7.48

−0.9

−1.1

-

TIMM17B (0/9)

4

 Ftsj1/LOC100044636^a

-

7.83

−0.3

−1.2

-

FTSJ1 (0/9)

4

 Hdac6

-

7.52

−7.5

−1.6

-

*

HDAC6 (0/5)

 Wdr13^a

-

7.71

-

−1.0

-

WDR13 (0/9)

 Rbm3^a

-

7.72

−6.4

−1.7

−5.8

RBM3 (0/9)

 2900002K06Rik^a

+

7.72

-

−0.2

-

NA

 Ebp

-

7.77

-

−2.6

-

EBP (0/9)

Region 2

 Ddx3x/LOC100045923^a

+

12.86

−1.7

−0.9

−2.1

*

*

*

*

DDX3X (9/9)

3

 Med14^a

-

12.34

−0.5

−1.4

−7.3

CRSP2 (6/6)

3

 Usp9x^a

+

12.65

−0.9

−1.3

−9.0

*

USP9X (9/9)

3

 1810030O07Rik^a

-

12.25

1.3

−5.1

−5.9

*

*

MGC39350 (8/9)

3

Region 3

 Uba1^a

+

20.24

−0.4

−3.7

−0.9

UBE1 (9/9)

3

 Cdk16/Pctk1^a

+

20.27

−1.1

-

−0.4

*

PCTK1 (7/7)

3

 Usp11^a

+

20.28

−0.5

−7.1

−8.2

USP11 (4/9)

3

 Araf

+

20.43

−1.0

-

-

ARAF1 (0/6)

3