Fig. 4
From: Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella
Results of streaming phylogenetic placement from the Oxford Nanopore MinION on a reference tree of representative published Salmonella enterica sequences. Common serovars of Salmonella are highlighted. Both outbreak and non-outbreak strains are unambiguously identified as Salmonella enterica serovar Enteritidis by their position on the phylogenetic tree within 50Â min. The line demonstrates the potential range of placements reported by pplacer. The red placements indicate the positions of the outbreak isolate and the blue placements indicate the positions of the non-outbreak isolate