Fig. 3From: Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella Streaming taxonomic assignments from the Oxford Nanopore MinION are shown for an isolate belonging to the outbreak and an isolate not belonging to the outbreak. Assignments to Salmonella and Salmonella enterica are found within 10Â min of starting sequencing for the outbreak strain and within 20Â min for the non-outbreak strain. Phage-specific sequences are detected and are distinct between the non-outbreak and outbreak strain. The non-outbreak strain harbours Salmonella phage ST64B and Gifsy-2, whereas the outbreak strain harbours Salmonella phage RE2010Back to article page