From: Split-alignment of genomes finds orthologies more accurately
Genomes | Probabilities | t | Scores | Â | Â |
---|---|---|---|---|---|
 | a c g t |  | a c g t |  |  |
 | a.29.00053.0022.00044 |  | a 77 -300 -212 -337 |  |  |
human-chimp | c.00053.2.00054.0022 | 63.495 | c -300 100 -275 -212 | Â | Â |
 | g.0022.00054.2.00053 |  | g -212 -275 100 -300 |  |  |
 | t.00044.0022.00053.29 |  | t -337 -212 -300 77 |  |  |
 | gap existence probability: 0.00077 |  | gap existence cost: 495 |  |  |
 | gap extension probability: 0.65 |  | gap extension cost: 27 |  |  |
 | a c g t |  | a c g t |  |  |
 | a.29.0013.0055.001 |  | a 77 -248 -154 -287 |  |  |
human-orangutan | c.0013.2.0013.0055 | 64.4704 | c -248 100 -222 -154 | Â | Â |
 | g.0055.0013.2.0013 |  | g -154 -222 100 -248 |  |  |
 | t.001.0055.0013.29 |  | t -287 -154 -248 77 |  |  |
 | gap existence probability: 0.0018 |  | gap existence cost: 448 |  |  |
 | gap extension probability: 0.65 |  | gap extension cost: 28 |  |  |
 | a c g t |  | a c g t |  |  |
 | a.24.012.037.013 |  | a 77 -126 -38 -154 |  |  |
human-dog | c.012.14.0087.037 | 79.0646 | c -126 100 -121 -38 | Â | Â |
 | g.037.0087.14.012 |  | g -38 -121 100 -126 |  |  |
 | t.013.037.012.24 |  | t -154 -38 -126 77 |  |  |
 | gap existence probability: 0.012 |  | gap existence cost: 429 |  |  |
 | gap extension probability: 0.73 |  | gap extension cost: 25 |  |  |
 | a c g t |  | a c g t |  |  |
 | a.22.016.044.018 |  | a 79 -114 -27 -136 |  |  |
human-mouse | c.016.13.011.044 | 86.9541 | c -114 100 -115 -27 | Â | Â |
 | g.044.011.13.016 |  | g -27 -115 100 -114 |  |  |
 | t.018.044.016.22 |  | t -136 -27 -114 79 |  |  |
 | gap existence probability: 0.015 |  | gap existence cost: 451 |  |  |
 | gap extension probability: 0.73 |  | gap extension cost: 27 |  |  |
 | a c g t |  | a c g t |  |  |
 | a.21.015. 031.014 |  | a 92 -123 -59 -139 |  |  |
Dro.mel-Dro.pse | c.015.17.014.031 | 86.2603 | c -123 100 -117 -59 | Â | Â |
 | g.031.014.17.015 |  | g -59 -117 100 -123 |  |  |
 | t.014.031.015.21 |  | t -139 -59 -123 92 |  |  |
 | gap existence probability: 0.016 |  | gap existence cost: 445 |  |  |
 | gap extension probability: 0.73 |  | gap extension cost: 27 |  |  |